If you run an analysis on a model with disconnected elements, the simulated flow of plastic through the part may be interrupted at the discontinuities.
If the problem still exists, use the Free Edge diagnostic and study the problem areas. Global Merge or Merge Nodes should fix the problem. For example there can be mesh connectivity problems in the model where the tip of a gate is not connected correctly to the runner beam that is attached to the part after creation. In order to remove this type of mesh connectivity problem, click ( ) and check off Merge nodes along an element edge only, if the problem relates to very close or coincident nodes belonging to the runner system.