When you launch an analysis in Autodesk Moldflow Insight, the Job Manager will copy the study file from your project directory to the directory specified by the Temporary Directory setting for the Job Server on which the job is to be run.
Once the analysis has completed on the selected Job Server, the results are copied back to the project directory. Note that if you close Autodesk Moldflow Insight and the analysis completes while the program is not running, the results will not be copied back until you reopen Autodesk Moldflow Insight.