You can convert .fbx files created in MotionBuilder 2016 to an earlier version of .fbx file format by choosing from the main MotionBuilder menu Python Tools > FBX Export .
Python Tools menu
Saving MotionBuilder 2016 to FBX version 2014/2015 or FBX version 2013 ensures compatibility with Autodesk version 2013 to 2015 applications.
FBX Export
FBX SDK 2016.0 is integrated in the MotionBuilder 2016 Beta release. It supports 64-bit file I/O to open larger FBX files. Due to the change from 32-bit to 64-bit file I/O support, you cannot save files using MotionBuilder 2016 in the earlier versions. File export to 2014 or 2015 versions are added under Python Tools > FBX Export, so that you can open files that are less than 2 GB in size in these earlier MotionBuilder versions.