This command moves all alignments in a selected site to the Alignments collection in Prospector. The alignments will no longer be part of the site, but their names will be maintained.
Important: This command removes all alignments from the site, not just those with overlapping segments. It is the equivalent of using the Move To Site command and selecting the <None> site.
- Run the FindSiteOverlaps command to diagnose the issue.
- If overlapping alignments are found, then at the Command line, enter RemoveAlignmentsFromSite.
- Select the site from which you want to remove the alignments and click OK.