Check in files to save your changes to the vault.
If you are checking in a DWF file, Autodesk recommends that you save and check in all components first. Then save the DWF file and check it in.
If this is the first time you are checking in these files, you are asked for the target folder.
If you check in files from a directory which is not in the virtual folder path, you have to close and erase the file from Pro/ENGINEER. The Vault add-in for Pro/ENGINEER & Creo will provide prompts for closing and erasing the files and perform all actions needed.