The presence of openings in a surface analytical model can make it overly complicated for analysis. However, you can simplify the analytical model by specifying which openings should be included in it.
Analytical Model Tools panel
(Adjust).
(Openings) to reveal check boxes for each opening. 
Openings with their check boxes selected are included in the analytical surface.
(Modify) to exit the tool.
(Finish Edit Mode) to save changes.